Well since I doubt TR is leaving by the Fall, we'll likely see them continue into the BW2 arc of whatever it is.
After TR is disbanded, I expect J/J/M to have a goodbye episode. They'll first reunite with their old Pokes at TR HQ, and perhaps James will get a call from Gardenia of how
Cacnea is doing, and maybe
Chimecho too. We'll also see brief shots of
Arbok/
Weezing still protecting the herd of Pokemon back in Hoenn.
I highly suspect Jessie will decide to become a coordinator again, going off to some random region to do them. James and
Meowth will follow along, with James' parents making one last appearance. Meowth will realize he has to stick with his friends till the end of time.
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