For me, it's pretty much always been in the order they were obtained, but now that I think about it, I might try to organize my boxes in White 2 & in future games.
For me, it's pretty much always been in the order they were obtained, but now that I think about it, I might try to organize my boxes in White 2 & in future games.
My favorite shinies. :3

By types and sometimes by lettering. Depends what mood I was in XD
I've claimed
Pokémon
Zoroark (26/9/12)
Moves
Earthquake (26/9/12)
Items
Tidal Bell (26/9/12)
DeepSeaTooth (26/9/12)
Abilities
Magnet Pull (26/9/12)
I organize them by Pokédex order, and I only have 15 Pokémon per box with a column between them so I can see all of them clearly. For example, my first box is:
Venusaur (Blank) Charizard (Blank) Blastoise (Blank)
Butterfree (Blank) Beedrill (Blank) Pidgeot (Blank)
Raticate (Blank) Fearow (Blank) Arbok (Blank)
Pikachu (Blank) Raichu (Blank) Sandslash (Blank)
Nidoqueen (Blank) Nidoking (Blank) Clefable (Blank)
In Soul Silver I have so many Pokemon that it's hard to keep track of them. So, I organise the box system, having one box for Pokemon I will probably release further on, one box for Pokemon I want to train, one box for trained Pokemon, one for breed Pokemon etc. I check the IV of my Pokemon and sort them accordingly. If the IV is good, but I feel it's not in the appropriate stat for this Pokemon, then it usually ends up in the breed box. In older games I also used to have a trade box.
In other games I don't have that many Pokemon, since I only get the ones I need, so I only fill about two boxes, one for important Pokemon and one for the rest. That's why I often start training Pokemon from certain events or downloaded Pokemon before I train Pokemon from the wild.
Captain Lincoln Stern, you stand here accused of...
12 counts of murder in the first degree
14 counts of armed theft of Federation property
22 counts of piracy in high space
18 counts of fraud
37 counts of rape
and 1 moving violation....how do you plead?

My first couple boxes are my regular Pokémon, organized by level from highest to lowest. After that, I have a box for legendaries/shinies, then special Pokémon (like specially bred with egg moves), my own bred Pokémon, then a junk box for trade fodder.
FCs- HG: 4426 5257 0152 Pt: 0131 7157 4821 W: 3095 6620 2000 W2: 1851 0568 6600

I organize them by type, with my competitives at the top-right and my others at the bottom-left.
http://www.smogon.com/bw/pokemon/lucario - Smogon on Lucario
http://www.mcleodgaming.com/viewflash.php?id=6&type=game - Click here if you like SSB!
http://play.pokemonshowdown.com/lobby - Click here if you like competitive Pokemon!
Before Gen IV, I would always just sort them by the order I caught them. In Diamond, I originally sorted by the primary type, then I started running out of room and ordered everything by Dex number. In Black, I reserved one box for sorting, one box for competitives, and the rest by dex number. In B2, I reserved a box for sorting and a box for competitives and then about 12 boxes for DWF's, two boxes for legends, two boxes for my Vanillite collection, and the rest for dex fillers.
I do this as well. I first organize a box for each type, then make a box for my team and hm pokemon, then another one for legendaries and other event pokemon, a box for all unown, and the last box I call "Baby Box" which has pokemon that are either an egg or are at a level under ten.
Hmm, I don't but maybe I should. I just let them pile up. I once tried going by type, but there are so many 2-type Pokemon that it got confusing.
I don't arrange my PC boxes in any specific order so they are usually arranged in the order of when they we caught, obtained or bred.
Staff member of Bulbanews (Writer). Staying up late? Join The No Sleepies Group! I've claimed Cacturne, Suicune, Hustle, Hydro Cannon and Gary.
Usually, I just leave them in the order they were obtained. My Pokémon in Black 2 are arranged in National Dex order, though (it took forever to get all of them in place).
By colors, because I'm a racist.
Normally, I do not bother to organise the boxes. When I do so, I normally
organise it by National Pok�dex number, to provide for a Living Pok�dex. If
applicable, I put the Unown in their own box.
woddfellow2 | http://wlair.us.to/ | PGP: 20EB90D3
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Popular options:
1. Random Pile Box
2. Breeding Box
3. Legendary Box
4. Shiny Box
5. N Box
6. Trade Box
7. EV Training Box
8. Living Pokedex Box
9. Type Box
10. Dream World (Females) Box
Remind me if I missed anything or if you have other ideas. This will also be updated on the front page.
Dangerous Circus
Got a box for N 'mon and legendaries, and another for trade candidates (usually excess Dream Radar 'mon). Otherwise, there's no set order.
Black FC: 2967 3488 1506 Black 2 FC: 0519 6117 0349
Claims (Pokémon): Nidoqueen, Razor Claw, Hondew Berry, Fiery Dance, Limber
Claims (other): Palutena (Kid Icarus) and Lucina (Fire Emblem Awakening)
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