For the Akatsuki their likely pokemon would be and their reasons
Deidara:
Electrode (both like to explode)
Sasori:
Skorupi (cause his name means scorpion)
Tobi: I guess
Igglybuff (cause it has a swirl on its head like Tobi's mask)
Zetsu: Either
Carnivine or
Victreebel (the carnivorous plants)
Kisame:
Sharpedo (Kisame seems to have a shark furry fetish going on)
Itachi:
Weavile (Itachi means weasel, maybe give his brother Sasuke a Sneasle)
Konan:
Butterfree (cause she is able to make butterflies out of paper)
Pein:
Magnemite (due to the charka rods and the Deva path uses something similar to magnetism)
Hidan:
Duskull (cause Hidan looks like a skeleton during his Jashin Ritual technique)
Kakuzu:
Meowth (largely because both are really attracted to money)
note this was largely influenced from an artwork from Deviantart
here is the web address
http://browse.deviantart.com/?qh=§ion=&q=akatsuki+team+rocket#/d17bkaj
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